PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G012400.1
Common NameB456_001G012400, LOC105792572
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 518aa    MW: 57642.5 Da    PI: 8.5559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G012400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12340384554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h + Er+RR+++N++f  Lr+llP+      +K +Ka++L+ A eY+ sL
  Gorai.001G012400.1 340 HMMSERKRREKLNESFVALRSLLPSG-----TKRDKASVLTTAREYLVSL 384
                         8899*********************8.....8**************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.54E-12333388No hitNo description
SuperFamilySSF474591.57E-16334403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.11335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13339399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9340384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-12341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDAVFNLDEA SRAEFLHLLM QSTGCSYICL WSYSFLQQAN CLIGLDGFCN EENSQALGLF  60
LEYKQLILRL ENDNGLVPGF AFKNNQPYIE LRELELQNRA FHETQRQFYR VAGIKVCFQA  120
NTAAFMACRS GEIELGSSSV VQLNMEMEMR SFFSEDQLPQ STDQNRPSSS SSSLRSLSTS  180
SPDSSLIFTV PTTHEPAPSS LQQATITPSS INDPRRAMQA FSQTGSSIPL PTLESENAAM  240
TRAILAVLTS PSSSSSSSST PFYRNQSLPY NNYRLNPKAS AFKGYATGLG AGPATTPARA  300
SLRAQAMMKR AILFYRKFNL ARREQLLRSR PGPTSNQLHH MMSERKRREK LNESFVALRS  360
LLPSGTKRDK ASVLTTAREY LVSLKAQIME LNRQKQLLEA PILPPKEGAA AIEVNDPSNE  420
RVNVRVIPVP ESTSEERLAD LRVTVRGERP IVDILIHLLE FLKLDRNVSL MSIEANTGVS  480
EFGSVNLVSL RLRIQGDGWD ESTFQEAVRR LITHLAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343348ERKRRE
2344349RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476697.10.0PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBLA0A0D2QJ470.0A0A0D2QJ47_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-58bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]